2024-2025 Wales Challenge League Cup | Rank | Player | Country | Team | Goals | Home Goals | Away Goals | Detail |
| 1 | Michael Reindorf | England | Cardiff City U21 | 7 | 7 | 0 | detail |
| 2 | Tom Vincent | England | UWIC Inter Cardiff | 4 | 2 | 2 | detail |
| 3 | Aramide Oteh | England | The New Saints | 3 | 2 | 1 | detail |
| 4 | Keane Watts | Wales | Goytre Utd | 3 | 1 | 2 | detail |
| 5 | Dominic Deacon | Wales | Gresford | 3 | 1 | 2 | detail |
| 6 | Max Moore | Wales | Buckley Town | 3 | 3 | 0 | detail |
| 7 | Adam Stephens | England | Llandudno | 3 | 2 | 1 | detail |
| 8 | Ollie Hulbert | England | Barry Town United | 3 | 2 | 1 | detail |
| 9 | Niall Flint | England | Aberystwyth Town | 3 | 2 | 1 | detail |
| 10 | Jonathan Evans | Wales | Aberystwyth Town | 2 | 2 | 0 | detail |
| 11 | George Peers | Wales | Airbus UK Broughton | 2 | 0 | 2 | detail |
| 12 | Sam Rickett | England | Airbus UK Broughton | 2 | 0 | 2 | detail |
| 13 | Daniel Hawkins | England | Haverfordwest County | 2 | 0 | 2 | detail |
| 14 | Luca Hogan | Wales | Connahs Quay Nomads FC | 2 | 2 | 0 | detail |
| 15 | Declan McManus | Scotland | The New Saints | 2 | 0 | 2 | detail |
| 16 | Hussein Mehasseb | Egypt | Bala Town F.C. | 2 | 2 | 0 | detail |
| 17 | Rhys Thomas | Wales | Goytre Utd | 2 | 0 | 2 | detail |
| 18 | Craig Rogers | Mold Alexandra | 2 | 0 | 2 | detail | |
| 19 | Lewis Rees | Wales | UWIC Inter Cardiff | 2 | 1 | 1 | detail |
| 20 | Jake Morris | Wales | UWIC Inter Cardiff | 2 | 2 | 0 | detail |
| 21 | Jac Clay | Wales | UWIC Inter Cardiff | 2 | 2 | 0 | detail |
| 22 | Jamie Hyne | Wales | Guilsfield | 2 | 0 | 2 | detail |
| 23 | Kayne McLaggon | Wales | Barry Town United | 2 | 2 | 0 | detail |
| 24 | Keenan Patten | Wales | Barry Town United | 2 | 0 | 2 | detail |
| 25 | Cody Twose | Wales | Cardiff City U21 | 2 | 0 | 2 | detail |
| 26 | Keyon Reffell | Wales | Pen-y-Bont FC | 2 | 0 | 2 | detail |
| 27 | Matt Kimmins | Belgium | Llantwit Major | 2 | 2 | 0 | detail |
| 28 | Matthew Worrall | England | Llay Miners Welfare | 2 | 2 | 0 | detail |
| 29 | Sion Bradley | Wales | The New Saints | 2 | 2 | 0 | detail |
| 30 | Alex Darlington | Wales | Aberystwyth Town | 1 | 0 | 1 | detail |